JaneliaSciComp/bigstitcher

module

Performs 3-D multi-tile and multi-angle alignment using BigStitcher-Spark

spark stitching BigStitcher

Module Information

Repository: https://github.com/JaneliaSciComp/nextflow-modules/tree/main/modules/janelia/bigstitcher/module
Source: Janelia
Organization: JaneliaSciComp
Authors: @cgoina
Maintainers: @cgoina

Tools

BigStitcher

The BigStitcher is a software package that allows simple and efficient alignment of multi-tile and multi-angle image datasets, for example acquired by lightsheet, widefield or confocal microscopes.

License: ['BSD-3-Clause']

Inputs

Name	Type	Description
meta	map	Groovy map containing: id, input_image_dataset
spark	map	Map containing spark cluster information
module_class	string	Module class name
module_args	list	Module specific arguments. These depend on the module class
data_files	path	Data files

Outputs

Name	Type	Description
meta	map	Groovy map containing: id, input_image_dataset
spark	map	Tuple spark cluster metadata

Quick Start

Include this module in your Nextflow pipeline:

include { BIGSTITCHER } from 'https://github.com/JaneliaSciComp/nextflow-modules/tree/main/modules/janelia/bigstitcher/module'

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