JaneliaSciComp/rs_fish

module

Precise, interactive, fast, and scalable FISH spot detection

spatial transcriptomics spatial genomics FISH

Module Information

Repository: https://github.com/JaneliaSciComp/nextflow-modules/tree/main/modules/janelia/rs_fish
Source: Janelia
Organization: JaneliaSciComp
Authors: @krokicki , @cgoina

Name	Type	Description
ch_meta	tuple	Channel of tuples containing a meta map Structure: [ val(meta), path(input_image), val(input_dataset), val(spark) ]

Name	Type	Description
params	tuple	Same as the input tuple
csv	file	Output CSV file
versions	file	File containing software versions

Include this module in your Nextflow pipeline:

include { RS_FISH } from 'https://github.com/JaneliaSciComp/nextflow-modules/tree/main/modules/janelia/rs_fish'