JaneliaSciComp/bigstream_registration

subworkflow

Runs a registration pipeline using Bigstream on a Dask cluster

registration bigstream dask

Module Information

Repository: https://github.com/JaneliaSciComp/nextflow-modules/tree/main/subworkflows/janelia/bigstream_registration
Source: Janelia
Organization: JaneliaSciComp
Authors: @krokicki , @cgoina

This subworkflow uses the following modules:

Name	Type	Description
global	tuple	Global alignment results from BIGSTREAM_GLOBALALIGN. Structure: [ val(meta), path(fix_image), val(fix_image_subpath), path(mov_image), val(mov_image_subpath), path(transform_dir), val(transform_name), path(align_dir), val(align_name), val(align_subpath) ]
local	tuple	Local alignment results from BIGSTREAM_LOCALALIGN. Structure: [ val(meta), path(fix_image), val(fix_image_subpath), path(mov_image), val(mov_image_subpath), path(affine_transform), path(transform_dir), val(transform_name), val(transform_subpath), val(inv_transform_name), val(inv_transform_subpath), path(align_dir), val(align_name), val(align_subpath) ]
cluster	tuple	Cluster termination signal. Structure: [ val(meta), val(empty_map) ]

Include this subworkflow in your Nextflow pipeline:

include { BIGSTREAM_REGISTRATION } from 'https://github.com/JaneliaSciComp/nextflow-modules/tree/main/subworkflows/janelia/bigstream_registration'