nf-core/basicpy

module

BaSiCPy is a python package for background and shading correction of optical microscopy images. It is developed based on the Matlab version of BaSiC tool with major improvements in the algorithm.

illumiation_correction background_correction microscopy imaging

Module Information

Repository: https://github.com/nf-core/modules/tree/master/modules/nf-core/basicpy
Source: nf-core
Organization: nf-core
Authors: @FloWuenne
Maintainers: @FloWuenne

Tools

basicpy

BaSiCPy is a python package for background and shading correction of optical microscopy images. It is developed based on the Matlab version of BaSiC tool with major improvements in the algorithm.

License: MIT License

Inputs

Name	Type	Description
0

Quick Start

Include this module in your Nextflow pipeline:

include { BASICPY } from 'https://github.com/nf-core/modules/tree/master/modules/nf-core/basicpy'

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