nf-core/bioformats2raw

module

Java application to convert image file formats, including .mrxs, to an intermediate Zarr structure compatible with the OME-NGFF specification.

zarr ome-ngff imaging

Module Information

Repository: https://github.com/nf-core/modules/tree/master/modules/nf-core/bioformats2raw
Source: nf-core
Organization: nf-core
Authors: @CaroAMN
Maintainers: @CaroAMN

Java application to convert image file formats, including .mrxs, to an intermediate Zarr structure compatible with the OME-NGFF specification.

License: GPL-2.0

Name	Type	Description
0

Include this module in your Nextflow pipeline:

include { BIOFORMATS2RAW } from 'https://github.com/nf-core/modules/tree/master/modules/nf-core/bioformats2raw'