nf-core/imc2mc

module

Staging module transforming Imaging Mass Cytometry .txt files to .tif files with OME-XML metadata. Includes optional hot pixel removal.

imaging ome-tif staging MCMICRO

Module Information

Repository: https://github.com/nf-core/modules/tree/master/modules/nf-core/imc2mc
Source: nf-core
Organization: nf-core
Authors: @MargotCh , @kbestak
Maintainers: @MargotCh

Formatting Imaging Mass Cytrometry (IMC) output files to be compatible with the MCMICRO pipeline.

License: GPL-3.0 license

Name	Type	Description
0

Include this module in your Nextflow pipeline:

include { IMC2MC } from 'https://github.com/nf-core/modules/tree/master/modules/nf-core/imc2mc'