nf-core/mindagap_mindagap

module

Takes a single panorama image and fills the empty grid lines with neighbour-weighted values.

imaging resolve_bioscience spatial_transcriptomics

Module Information

Repository: https://github.com/nf-core/modules/tree/master/modules/nf-core/mindagap/mindagap
Source: nf-core
Organization: nf-core
Authors: @ViriatoII , @flowuenne
Maintainers: @ViriatoII , @flowuenne

Mindagap is a collection of tools to process multiplexed FISH data, such as produced by Resolve Biosciences Molecular Cartography.

License: BSD-3-Clause license

Name	Type	Description
0

Include this module in your Nextflow pipeline:

include { MINDAGAP_MINDAGAP } from 'https://github.com/nf-core/modules/tree/master/modules/nf-core/mindagap/mindagap'