nf-core/stardist

module

Cell and nuclear segmentation with star-convex shapes

stardist segmentation image gpu spatial-transcriptomics

Module Information

Repository: https://github.com/nf-core/modules/tree/master/modules/nf-core/stardist
Source: nf-core
Organization: nf-core
Authors: @migueLib , @dongzehe
Maintainers: @migueLib

Stardist is an cell segmentation tool developed in Python by Martin Weigert and Uwe Schmidt

License: BSD 3-Clause

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Include this module in your Nextflow pipeline:

include { STARDIST } from 'https://github.com/nf-core/modules/tree/master/modules/nf-core/stardist'