nf-core/vizgenpostprocessing_compiletilesegmentation

module

The module compiles segmentation tiles using Vizgen's post-processing tool.

vpt vizgen segmentation microscopy spatial transcriptomics

Module Information

Repository: https://github.com/nf-core/modules/tree/master/modules/nf-core/vizgenpostprocessing/compiletilesegmentation
Source: nf-core
Organization: nf-core
Authors: @mcmero
Maintainers: @mcmero

Tools

vizgenpostprocessing

Vizgen's post-processing tool

License: Apache-2.0

Inputs

Name	Type	Description
0
algorithm_json	file	JSON file containing the algorithm parameters.
segmentation_tiles	file	Parquet files containing the segmentation results for tiles to compile.

Quick Start

Include this module in your Nextflow pipeline:

include { VIZGENPOSTPROCESSING_COMPILETILESEGMENTATION } from 'https://github.com/nf-core/modules/tree/master/modules/nf-core/vizgenpostprocessing/compiletilesegmentation'

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