cellgeni/imaging_extractpeakprofile

module

Extract max intensity peak profile from an image stack with a file of peak coordinates

image

Module Information

Repository: https://github.com/cellgeni/nf-modules/tree/main/modules/sanger-cellgeni/imaging/extractpeakprofile
Source: Sanger (cellgeni)
Organization: cellgeni
Authors: @BioinfoTongLI
Maintainers: @BioinfoTongLI

A bioimage analysis toolset of Tong LI

License: MIT

Name	Type	Description
meta	map	Groovy Map containing sample information e.g. `[ id:'sample1']`
image	file	image file
peaks	file	peak location files

Name	Type	Description
meta	map	Groovy Map containing sample information e.g. `[ id:'sample1']`
versions	file	File containing software versions
peak_profile	file	Peak profile of the entire image stack file
peak_locations	file	Corresponding peak location file

Include this module in your Nextflow pipeline:

include { IMAGING_EXTRACTPEAKPROFILE } from 'https://github.com/cellgeni/nf-modules/tree/main/modules/sanger-cellgeni/imaging/extractpeakprofile'