cellgeni/ml_xeniumharmonise

module

A wrapper module for harmonise_xenium.py script

spatial-transcriptomics(xenium) ml he-image

Module Information

Repository: https://github.com/cellgeni/nf-modules/tree/main/modules/sanger-cellgeni/ml/xeniumharmonise
Source: Sanger (cellgeni)
Organization: cellgeni
Authors: @dn10-sanger
Maintainers: @dn10-sanger

Name	Type	Description
0

Name	Type	Description
meta	map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
output_dir	directory	directory for harmonised_xenium outputs.
versions	file	File containing software versions

Include this module in your Nextflow pipeline:

include { ML_XENIUMHARMONISE } from 'https://github.com/cellgeni/nf-modules/tree/main/modules/sanger-cellgeni/ml/xeniumharmonise'