cellgeni/spatial_nichecompassanalysis

module

Analysis based on the NicheCompass model

spatial_atlas_building niche_identification niche_characterisation cell-cell_communication_inference spatial_reference_mapping analysis deep-learning

Module Information

Repository: https://github.com/cellgeni/nf-modules/tree/main/modules/sanger-cellgeni/spatial/nichecompassanalysis
Source: Sanger (cellgeni)
Organization: cellgeni
Authors: @ASUQ
Maintainers: @ASUQ

NicheCompass is a package for end-to-end analysis of spatial multiomics data by the Lotfollahi Lab

License: BSD-3-Clause license

Name	Type	Description
0

Include this module in your Nextflow pipeline:

include { SPATIAL_NICHECOMPASSANALYSIS } from 'https://github.com/cellgeni/nf-modules/tree/main/modules/sanger-cellgeni/spatial/nichecompassanalysis'