cellgeni/spatial_nichecompasstraining

module

Train a NicheCompass model on spatial multiomics data.

spatial_atlas_building niche_identification niche_characterisation cell-cell_communication_inference spatial_reference_mapping model_training deep-learning

Module Information

Repository: https://github.com/cellgeni/nf-modules/tree/main/modules/sanger-cellgeni/spatial/nichecompasstraining
Source: Sanger (cellgeni)
Organization: cellgeni
Authors: @ASUQ
Maintainers: @ASUQ

Tools

nichecompass

NicheCompass is a package for end-to-end analysis of spatial multiomics data by the Lotfollahi Lab

License: BSD-3-Clause license

Inputs

Name	Type	Description
0

Outputs

Name	Type	Description
0
versions	file	File containing software versions

Quick Start

Include this module in your Nextflow pipeline:

include { SPATIAL_NICHECOMPASSTRAINING } from 'https://github.com/cellgeni/nf-modules/tree/main/modules/sanger-cellgeni/spatial/nichecompasstraining'

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