cellgeni/tiled_spotiflow

subworkflow

Sort SAM/BAM/CRAM file

deep-learning peak-calling smFISH

Module Information

Repository: https://github.com/cellgeni/nf-modules/tree/main/subworkflows/sanger-cellgeni/tiled_spotiflow
Source: Sanger (cellgeni)
Organization: cellgeni
Authors: @BioinfoTongLI
Maintainers: @BioinfoTongLI

This subworkflow uses the following modules:

Name	Type	Description
ch_bam	file	The input image files Structure: [ val(meta), path(images) ]

Name	Type	Description
spots_in_csv	file	CSV file contains the peak locations Structure: [ val(meta), path(csv) ]
versions	file	File containing software versions Structure: [ path(versions.yml) ]

Include this subworkflow in your Nextflow pipeline:

include { TILED_SPOTIFLOW } from 'https://github.com/cellgeni/nf-modules/tree/main/subworkflows/sanger-cellgeni/tiled_spotiflow'